Hi Jock,
The method is called mortise and tenon. There are two basic types of joinery in wood car construction mortise and tenon and the use of corner irons. In some cases both are used. The key to the cars stability is the steel rods that travel through the car body. Truss rods keep the base frame (end sills and stringers) true. The cross rods help put weight on the bolsters. Through rods will be installed next to each stud, these keep the car sides well seated to the frame and plumb. Top rods will be used as well. They keep the roof rafters solid to the top sills and give extra support for the roof structure. When tightened, the top and side rods draw the wooden members into the sills. After the frame is built, sheathing the car inside and out ties everything together.
Stewart